Hey guys, sorry about the inconvenience with Webroot. Disabling protection does seem to eliminate most of the issues we've seen with AVs in general.
At this point we've submitted countless false positives to most AV providers and it's difficult to stay completely in the clear because the tools we use, if used improperly, could potentially harm the machine. So for the moment at least, the best advice we can give is to submit a FP and turn off protection while repairing the machine.